Variant report

Variant	rs7316226
Chromosome Location	chr12:45875811-45875812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCAF11-1	chr12:45875654-45875854	ENSG00000257657.2

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10736027	0.93[EUR][1000 genomes]
rs10748424	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10748425	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10785574	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785575	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785576	0.91[EUR][1000 genomes]
rs10785578	0.91[EUR][1000 genomes]
rs10880791	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10880792	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10880794	0.94[EUR][1000 genomes]
rs10880799	0.88[ASN][1000 genomes]
rs11183062	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11183064	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183070	0.88[ASN][1000 genomes]
rs11183071	0.88[ASN][1000 genomes]
rs12228136	0.88[ASN][1000 genomes]
rs12303153	0.80[ASN][1000 genomes]
rs12830355	0.88[ASN][1000 genomes]
rs12832353	0.80[ASN][1000 genomes]
rs17096009	0.93[EUR][1000 genomes]
rs2408253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2408254	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2408255	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2408256	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2408272	0.94[EUR][1000 genomes]
rs2408318	0.94[EUR][1000 genomes]
rs2408323	0.94[EUR][1000 genomes]
rs2408325	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2897889	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2897904	0.80[ASN][1000 genomes]
rs2897905	0.94[EUR][1000 genomes]
rs2897907	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34331166	0.80[ASN][1000 genomes]
rs35449278	0.80[ASN][1000 genomes]
rs4378456	0.80[ASN][1000 genomes]
rs4570651	0.94[EUR][1000 genomes]
rs4768090	0.91[EUR][1000 genomes]
rs4768091	0.91[EUR][1000 genomes]
rs4768620	0.92[EUR][1000 genomes]
rs4768623	0.94[EUR][1000 genomes]
rs5003954	0.94[EUR][1000 genomes]
rs56217910	0.94[EUR][1000 genomes]
rs6582553	0.84[EUR][1000 genomes]
rs7133173	0.90[EUR][1000 genomes]
rs7302122	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7311901	0.94[EUR][1000 genomes]
rs7484690	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7486952	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7968560	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45870600-45877200	Weak transcription	Aorta	Aorta

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