Variant report

Variant	rs4768620
Chromosome Location	chr12:45866345-45866346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45862242..45863869-chr12:45863949..45866916,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10736027	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10748424	0.92[EUR][1000 genomes]
rs10748425	0.92[EUR][1000 genomes]
rs10785574	0.98[EUR][1000 genomes]
rs10785575	0.98[EUR][1000 genomes]
rs10785576	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785578	0.94[EUR][1000 genomes]
rs10880791	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10880792	0.92[EUR][1000 genomes]
rs10880794	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11183062	0.99[EUR][1000 genomes]
rs11183064	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17096009	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2408253	0.92[EUR][1000 genomes]
rs2408254	0.92[EUR][1000 genomes]
rs2408255	0.98[EUR][1000 genomes]
rs2408256	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2408272	0.98[EUR][1000 genomes]
rs2408318	0.98[EUR][1000 genomes]
rs2408323	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2408325	0.93[EUR][1000 genomes]
rs2897889	0.92[EUR][1000 genomes]
rs2897905	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2897907	0.93[EUR][1000 genomes]
rs4570651	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4768090	0.94[EUR][1000 genomes]
rs4768091	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4768623	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5003954	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56217910	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6582553	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7133173	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7302122	0.92[EUR][1000 genomes]
rs7311901	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7316226	0.92[EUR][1000 genomes]
rs7484690	0.92[EUR][1000 genomes]
rs7486952	0.98[EUR][1000 genomes]
rs7968560	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45864600-45867200	Weak transcription	Thymus	Thymus
2	chr12:45865200-45870600	Weak transcription	Adipose Nuclei	Adipose
3	chr12:45865400-45867600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:45865800-45866600	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links