Variant report

Variant	rs7311901
Chromosome Location	chr12:45874838-45874839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10736027	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10748424	0.93[EUR][1000 genomes]
rs10748425	0.94[EUR][1000 genomes]
rs10785574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785575	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10785576	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10785578	0.97[EUR][1000 genomes]
rs10880791	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880792	0.93[EUR][1000 genomes]
rs10880794	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10880798	0.82[ASN][1000 genomes]
rs10880800	0.82[ASN][1000 genomes]
rs10880803	0.82[ASN][1000 genomes]
rs10880804	0.82[ASN][1000 genomes]
rs11183062	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11183064	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183067	0.90[ASN][1000 genomes]
rs11183068	0.90[ASN][1000 genomes]
rs11183069	0.90[ASN][1000 genomes]
rs11183072	0.83[ASN][1000 genomes]
rs11183077	0.83[ASN][1000 genomes]
rs11183078	0.83[ASN][1000 genomes]
rs11183079	0.83[ASN][1000 genomes]
rs12298570	0.83[ASN][1000 genomes]
rs12303053	0.82[ASN][1000 genomes]
rs12316574	0.83[ASN][1000 genomes]
rs12317115	0.83[ASN][1000 genomes]
rs12320604	0.83[ASN][1000 genomes]
rs12321802	0.82[ASN][1000 genomes]
rs12830362	0.90[ASN][1000 genomes]
rs17096009	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408253	0.94[EUR][1000 genomes]
rs2408254	0.94[EUR][1000 genomes]
rs2408255	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408256	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408318	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2408325	0.93[EUR][1000 genomes]
rs2897889	0.93[EUR][1000 genomes]
rs2897905	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2897907	0.93[EUR][1000 genomes]
rs34265125	0.82[ASN][1000 genomes]
rs34865395	0.90[ASN][1000 genomes]
rs35296382	0.82[ASN][1000 genomes]
rs4567534	0.90[ASN][1000 genomes]
rs4570651	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4590938	0.90[ASN][1000 genomes]
rs4768090	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768091	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768620	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4768623	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5001653	0.90[ASN][1000 genomes]
rs5003954	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56217910	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6582553	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7133173	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7302122	0.92[EUR][1000 genomes]
rs7316226	0.94[EUR][1000 genomes]
rs73285289	0.82[ASN][1000 genomes]
rs7484690	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7486952	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7968560	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45870600-45877200	Weak transcription	Aorta	Aorta
2	chr12:45874800-45875400	Enhancers	Fetal Brain Male	brain

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