Variant report

Variant	rs4567534
Chromosome Location	chr12:45892083-45892084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45883877..45886088-chr12:45891473..45895322,3	MCF-7	breast:
2	chr12:45891586..45893830-chr12:45896863..45899327,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10736027	0.82[ASN][1000 genomes]
rs10785574	0.90[ASN][1000 genomes]
rs10785575	0.82[ASN][1000 genomes]
rs10785576	0.88[ASN][1000 genomes]
rs10785578	0.84[ASN][1000 genomes]
rs10880791	0.82[ASN][1000 genomes]
rs10880794	0.89[ASN][1000 genomes]
rs10880798	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880799	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10880800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880803	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880804	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880805	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10880806	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10880807	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183070	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183071	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183077	0.90[ASN][1000 genomes]
rs11183078	0.90[ASN][1000 genomes]
rs11183079	0.90[ASN][1000 genomes]
rs12228136	0.83[EUR][1000 genomes]
rs12297127	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12298570	0.90[ASN][1000 genomes]
rs12303053	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12303153	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12303449	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12316574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12317115	0.90[ASN][1000 genomes]
rs12320604	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12321802	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12830355	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12830362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12832353	0.83[EUR][1000 genomes]
rs17096009	0.97[ASN][1000 genomes]
rs2408255	0.83[ASN][1000 genomes]
rs2408256	0.90[ASN][1000 genomes]
rs2408272	0.90[ASN][1000 genomes]
rs2408318	0.90[ASN][1000 genomes]
rs2408323	0.89[ASN][1000 genomes]
rs2897904	0.83[EUR][1000 genomes]
rs2897905	0.97[ASN][1000 genomes]
rs33971594	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34265125	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34331166	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34865395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35296382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35449278	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4378456	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4570651	0.89[ASN][1000 genomes]
rs4590938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768090	0.88[ASN][1000 genomes]
rs4768091	0.90[ASN][1000 genomes]
rs4768623	0.89[ASN][1000 genomes]
rs5001653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5003954	0.97[ASN][1000 genomes]
rs56217910	0.97[ASN][1000 genomes]
rs7133173	0.84[ASN][1000 genomes]
rs7311901	0.90[ASN][1000 genomes]
rs73285289	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7486952	0.82[ASN][1000 genomes]
rs7968560	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45892000-45892200	Enhancers	Pancreas	Pancrea

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