Variant report

Variant	rs5003954
Chromosome Location	chr12:45892105-45892106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45883877..45886088-chr12:45891473..45895322,3	MCF-7	breast:
2	chr12:45891586..45893830-chr12:45896863..45899327,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10736027	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748424	0.92[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs10748425	0.94[EUR][1000 genomes]
rs10785574	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10785575	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10785576	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10785578	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10880791	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10880792	0.93[EUR][1000 genomes]
rs10880794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880798	0.89[ASN][1000 genomes]
rs10880800	0.89[ASN][1000 genomes]
rs10880803	0.89[ASN][1000 genomes]
rs10880804	0.89[ASN][1000 genomes]
rs10880805	0.85[ASN][1000 genomes]
rs10880806	0.84[ASN][1000 genomes]
rs10880807	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11183062	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183064	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183067	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11183068	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11183069	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11183072	0.90[ASN][1000 genomes]
rs11183077	0.90[ASN][1000 genomes]
rs11183078	0.90[ASN][1000 genomes]
rs11183079	0.90[ASN][1000 genomes]
rs12298570	0.90[ASN][1000 genomes]
rs12303053	0.89[ASN][1000 genomes]
rs12303449	0.84[ASN][1000 genomes]
rs12316574	0.90[ASN][1000 genomes]
rs12317115	0.90[ASN][1000 genomes]
rs12320604	0.90[ASN][1000 genomes]
rs12321802	0.89[ASN][1000 genomes]
rs12830362	0.97[ASN][1000 genomes]
rs17096009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408253	0.94[EUR][1000 genomes]
rs2408254	0.94[EUR][1000 genomes]
rs2408255	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408256	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408272	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408318	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408323	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408325	0.93[EUR][1000 genomes]
rs2897889	0.93[EUR][1000 genomes]
rs2897905	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2897907	0.93[EUR][1000 genomes]
rs33971594	0.84[ASN][1000 genomes]
rs34265125	0.89[ASN][1000 genomes]
rs34865395	0.97[ASN][1000 genomes]
rs35296382	0.89[ASN][1000 genomes]
rs4567534	0.97[ASN][1000 genomes]
rs4570651	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4590938	0.97[ASN][1000 genomes]
rs4768090	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768091	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4768620	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4768623	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5001653	0.97[ASN][1000 genomes]
rs56217910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582553	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7133173	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7302122	0.92[EUR][1000 genomes]
rs7311901	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7316226	0.94[EUR][1000 genomes]
rs73285289	0.89[ASN][1000 genomes]
rs7484690	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7486952	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7968560	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45892000-45892200	Enhancers	Pancreas	Pancrea

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