Variant report

Variant	rs7302122
Chromosome Location	chr12:45862953-45862954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45862242..45863869-chr12:45863949..45866916,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10736027	0.93[EUR][1000 genomes]
rs10748424	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10748425	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785574	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10785575	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10785576	0.89[EUR][1000 genomes]
rs10785578	0.89[EUR][1000 genomes]
rs10880787	0.80[ASN][1000 genomes]
rs10880791	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10880792	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880794	0.92[EUR][1000 genomes]
rs11183062	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11183064	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17096009	0.91[EUR][1000 genomes]
rs2408253	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408254	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408255	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2408256	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2408272	0.92[EUR][1000 genomes]
rs2408318	0.92[EUR][1000 genomes]
rs2408323	0.92[EUR][1000 genomes]
rs2408325	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2897889	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2897905	0.92[EUR][1000 genomes]
rs2897907	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4570651	0.92[EUR][1000 genomes]
rs4768090	0.89[EUR][1000 genomes]
rs4768091	0.89[EUR][1000 genomes]
rs4768620	0.92[EUR][1000 genomes]
rs4768623	0.92[EUR][1000 genomes]
rs5003954	0.92[EUR][1000 genomes]
rs56217910	0.92[EUR][1000 genomes]
rs6582553	0.85[EUR][1000 genomes]
rs7133173	0.88[EUR][1000 genomes]
rs7311901	0.92[EUR][1000 genomes]
rs7316226	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7484690	0.97[EUR][1000 genomes]
rs7486952	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7968560	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45861800-45865800	Enhancers	Fetal Thymus	thymus
2	chr12:45862200-45864600	Enhancers	Thymus	Thymus
3	chr12:45862400-45864800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:45862600-45863400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:45862800-45863200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr12:45862800-45863200	Bivalent/Poised TSS	HepG2	liver
7	chr12:45862800-45863400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr12:45862800-45863600	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links