Variant report

Variant	rs2408325
Chromosome Location	chr12:45863443-45863444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45862242..45863869-chr12:45863949..45866916,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10736027	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs10748424	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748425	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10785574	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10785575	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10785576	0.89[EUR][1000 genomes]
rs10785578	0.89[EUR][1000 genomes]
rs10880791	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10880792	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880794	0.93[EUR][1000 genomes]
rs11183062	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183064	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12228136	0.84[JPT][hapmap]
rs12303153	0.81[ASN][1000 genomes]
rs12832353	0.81[ASN][1000 genomes]
rs17096009	0.92[EUR][1000 genomes]
rs2408253	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2408254	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2408255	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2408256	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2408272	0.93[EUR][1000 genomes]
rs2408318	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs2408323	0.93[EUR][1000 genomes]
rs2897889	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2897904	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2897905	0.93[EUR][1000 genomes]
rs2897907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34331166	0.81[ASN][1000 genomes]
rs35449278	0.81[ASN][1000 genomes]
rs4378456	0.81[ASN][1000 genomes]
rs4570651	0.93[EUR][1000 genomes]
rs4768090	0.89[EUR][1000 genomes]
rs4768091	0.89[EUR][1000 genomes]
rs4768620	0.93[EUR][1000 genomes]
rs4768623	0.93[EUR][1000 genomes]
rs5003954	0.93[EUR][1000 genomes]
rs56217910	0.93[EUR][1000 genomes]
rs6582553	0.85[EUR][1000 genomes]
rs7133173	0.88[EUR][1000 genomes]
rs7302122	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7311901	0.93[EUR][1000 genomes]
rs7316226	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7484690	0.98[EUR][1000 genomes]
rs7486952	0.89[CEU][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7968560	0.88[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45861800-45865800	Enhancers	Fetal Thymus	thymus
2	chr12:45862200-45864600	Enhancers	Thymus	Thymus
3	chr12:45862400-45864800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:45862800-45863600	Enhancers	Primary T cells from cord blood	blood
5	chr12:45863000-45864400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr12:45863000-45864600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:45863200-45863800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:45863200-45864000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:45863200-45864000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:45863200-45864200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr12:45863200-45864400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr12:45863200-45864400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr12:45863200-45864400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr12:45863200-45865200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr12:45863400-45863600	Enhancers	Fetal Muscle Trunk	muscle
16	chr12:45863400-45864600	Enhancers	Primary hematopoietic stem cells	blood

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