Variant report

Variant	rs6582553
Chromosome Location	chr12:45861953-45861954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45861453..45862037-chr20:53367880..53368556,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10736026	0.87[EUR][1000 genomes]
rs10736027	0.93[ASW][hapmap];0.88[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10748424	0.84[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs10748425	0.84[EUR][1000 genomes]
rs10785574	0.90[EUR][1000 genomes]
rs10785575	0.90[EUR][1000 genomes]
rs10785576	0.86[EUR][1000 genomes]
rs10785578	0.86[EUR][1000 genomes]
rs10880787	0.81[EUR][1000 genomes]
rs10880791	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10880792	0.84[EUR][1000 genomes]
rs10880794	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11183056	0.87[EUR][1000 genomes]
rs11183062	0.91[EUR][1000 genomes]
rs11183064	0.84[EUR][1000 genomes]
rs17096009	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2408253	0.84[EUR][1000 genomes]
rs2408254	0.84[EUR][1000 genomes]
rs2408255	0.90[EUR][1000 genomes]
rs2408256	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2408272	0.90[EUR][1000 genomes]
rs2408318	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2408323	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2408325	0.85[EUR][1000 genomes]
rs2897889	0.84[EUR][1000 genomes]
rs2897905	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2897907	0.85[EUR][1000 genomes]
rs4505123	0.86[EUR][1000 genomes]
rs4570651	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768090	0.86[EUR][1000 genomes]
rs4768091	0.86[EUR][1000 genomes]
rs4768620	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768623	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5003954	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56217910	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7133173	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7302122	0.85[EUR][1000 genomes]
rs7311901	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7316226	0.84[EUR][1000 genomes]
rs7484690	0.84[EUR][1000 genomes]
rs7486952	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7968560	0.92[CEU][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45861800-45865800	Enhancers	Fetal Thymus	thymus

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