Variant report

Variant	rs11183070
Chromosome Location	chr12:45895823-45895824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45894009..45896602-chr12:46122436..46125409,2	MCF-7	breast:
2	chr12:45894701..45896615-chr12:45915195..45917105,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748424	0.94[JPT][hapmap]
rs10880793	0.80[EUR][1000 genomes]
rs10880798	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10880799	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880800	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10880803	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10880804	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10880805	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10880807	0.81[EUR][1000 genomes]
rs11183067	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183068	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183069	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183072	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12228136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231574	0.85[EUR][1000 genomes]
rs12297127	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12303053	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12303153	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12303449	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12316574	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12320604	0.94[AFR][1000 genomes]
rs12321802	0.94[AFR][1000 genomes]
rs12830355	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830362	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12832353	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408253	0.86[ASN][1000 genomes]
rs2897890	1.00[CEU][hapmap]
rs2897904	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33971594	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34265125	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34331166	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34865395	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35296382	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35449278	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4378456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567534	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4590938	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5001653	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7316226	0.88[ASN][1000 genomes]
rs73285289	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7484690	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1812235	chr12:45892993-45909531	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1791767	chr12:45892993-45912862	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45892200-45901600	Weak transcription	Pancreas	Pancrea
2	chr12:45895800-45896600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links