Variant report

Variant	rs10880793
Chromosome Location	chr12:45871926-45871927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10880799	0.80[EUR][1000 genomes]
rs11183061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183070	0.80[EUR][1000 genomes]
rs11183071	0.80[EUR][1000 genomes]
rs12228136	0.80[EUR][1000 genomes]
rs12231574	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12298677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12303153	0.80[EUR][1000 genomes]
rs12830355	0.80[EUR][1000 genomes]
rs12832353	0.80[EUR][1000 genomes]
rs2897904	0.80[EUR][1000 genomes]
rs34331166	0.80[EUR][1000 genomes]
rs35449278	0.80[EUR][1000 genomes]
rs4378456	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45870400-45872000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:45870600-45877200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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