Variant report

Variant	rs2907374
Chromosome Location	chr17:66520427-66520428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10468445	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286558	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2302230	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302231	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521534	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2907373	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2952271	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952275	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265886	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561532	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207491	0.85[AFR][1000 genomes]
rs7217296	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219227	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222188	0.81[AFR][1000 genomes]
rs8076465	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66509600-66525800	Weak transcription	Pancreas	Pancrea
2	chr17:66511600-66537000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:66511600-66537000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:66511800-66522200	Weak transcription	Fetal Brain Male	brain
5	chr17:66511800-66531600	Strong transcription	Fetal Intestine Large	intestine
6	chr17:66511800-66536600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:66511800-66537000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:66511800-66537800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr17:66512000-66530000	Strong transcription	HSMM	muscle
10	chr17:66513200-66528600	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr17:66513200-66533000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr17:66514200-66528800	Strong transcription	HepG2	liver
13	chr17:66514400-66520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr17:66514600-66524000	Weak transcription	Aorta	Aorta
15	chr17:66514600-66524000	Weak transcription	Esophagus	oesophagus
16	chr17:66514600-66526400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr17:66514800-66522800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr17:66514800-66523000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:66514800-66523200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr17:66514800-66525600	Weak transcription	Spleen	Spleen
21	chr17:66514800-66527800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr17:66514800-66537000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:66514800-66537400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr17:66514800-66537600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr17:66515000-66523000	Weak transcription	Stomach Mucosa	stomach
26	chr17:66515000-66535800	Strong transcription	Placenta	Placenta
27	chr17:66515200-66533400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr17:66515200-66534600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr17:66515400-66521800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:66515400-66521800	Weak transcription	Right Ventricle	heart
31	chr17:66516400-66521000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr17:66516400-66522200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:66516400-66524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:66516400-66525600	Weak transcription	Gastric	stomach
35	chr17:66516600-66527400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:66516600-66535800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr17:66516800-66535400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr17:66517200-66530000	Strong transcription	Osteobl	bone
39	chr17:66517200-66537600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr17:66517400-66537000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:66517600-66526400	Weak transcription	Fetal Intestine Small	intestine
42	chr17:66517600-66528800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr17:66517600-66529800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr17:66517600-66532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr17:66517600-66535400	Strong transcription	HMEC	breast
46	chr17:66517600-66536800	Strong transcription	Fetal Thymus	thymus
47	chr17:66517600-66537200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr17:66517800-66522600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr17:66517800-66528600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:66518000-66523000	Strong transcription	HUES6 Cell Line	embryonic stem cell

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