Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66502403..66503970-chr17:66505898..66507509,2	K562	blood:
2	chr17:66503157..66506597-chr17:66507024..66509568,3	K562	blood:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1030098	1.00[CHB][hapmap]
rs11656906	1.00[CHB][hapmap]
rs2286558	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs2287301	1.00[CHB][hapmap]
rs2907373	0.80[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2907374	0.81[AFR][1000 genomes]
rs2952271	0.80[CEU][hapmap]
rs2952275	0.80[CEU][hapmap]
rs2952278	0.86[YRI][hapmap]
rs2952291	1.00[CHB][hapmap]
rs4265886	0.80[CEU][hapmap]
rs4321253	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6501512	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7207491	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8066131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069982	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8076465	0.80[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs8080306	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs9892343	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9894682	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898700	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66502000-66505000	Weak transcription	Primary B cells from cord blood	blood
2	chr17:66502000-66507600	Weak transcription	Left Ventricle	heart
3	chr17:66503000-66505200	Enhancers	HepG2	liver
4	chr17:66503200-66504000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:66503200-66504400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr17:66503200-66505000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr17:66503400-66506200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr17:66503600-66503800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:66503600-66504000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:66503600-66504400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:66503600-66504400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr17:66503600-66504400	Enhancers	HSMMtube	muscle
13	chr17:66503600-66504600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr17:66503600-66507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:66503600-66507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr17:66503600-66507600	Enhancers	Primary monocytes fromperipheralblood	blood

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