Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1030098	1.00[CHB][hapmap]
rs11656906	1.00[CHB][hapmap]
rs2286558	0.91[YRI][hapmap]
rs2287301	1.00[CHB][hapmap]
rs2302230	0.82[AFR][1000 genomes]
rs2907373	1.00[YRI][hapmap]
rs2907374	0.85[AFR][1000 genomes]
rs2952278	0.84[YRI][hapmap]
rs2952282	0.81[ASN][1000 genomes]
rs2952291	1.00[CHB][hapmap]
rs4321253	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6501512	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222188	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8066131	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8069982	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8076465	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs8080306	0.82[EUR][1000 genomes]
rs9892343	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9894682	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9898700	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66494000-66496000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr17:66494400-66496000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:66494600-66503600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:66495200-66497800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr17:66495400-66496400	Enhancers	GM12878-XiMat	blood
6	chr17:66495400-66496600	Enhancers	Primary B cells from cord blood	blood
7	chr17:66495600-66497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:66495800-66497400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr17:66495800-66497600	Enhancers	Primary neutrophils fromperipheralblood	blood

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