Variant report

Variant	rs8069982
Chromosome Location	chr17:66489508-66489509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66480053..66482691-chr17:66486689..66489527,2	K562	blood:
2	chr17:66486129..66489864-chr17:66505965..66510014,4	MCF-7	breast:
3	chr17:66479120..66480633-chr17:66487594..66490135,2	MCF-7	breast:
4	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030098	1.00[CHB][hapmap]
rs11656906	1.00[CHB][hapmap]
rs2287301	1.00[CHB][hapmap]
rs2860302	0.80[ASN][1000 genomes]
rs2952282	0.83[ASN][1000 genomes]
rs2952291	1.00[CHB][hapmap]
rs4321253	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6501512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7207491	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7222188	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8066131	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs8080306	0.86[CEU][hapmap]
rs9892343	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894682	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9898700	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:66487000-66489600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr17:66487200-66493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:66488200-66493400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:66488200-66493800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:66488200-66494600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:66488400-66490000	Enhancers	Adipose Nuclei	Adipose
8	chr17:66488400-66493800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr17:66488400-66494400	Weak transcription	Ovary	ovary
10	chr17:66488400-66494600	Weak transcription	Gastric	stomach
11	chr17:66488600-66489600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr17:66488600-66493200	Weak transcription	GM12878-XiMat	blood
13	chr17:66488600-66493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:66488600-66493800	Weak transcription	Spleen	Spleen
15	chr17:66488800-66489600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr17:66488800-66490400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr17:66488800-66493400	Weak transcription	Primary B cells from cord blood	blood
18	chr17:66488800-66493800	Weak transcription	Colonic Mucosa	Colon
19	chr17:66488800-66493800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr17:66488800-66494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:66488800-66494200	Weak transcription	Pancreas	Pancrea
22	chr17:66489000-66492600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr17:66489200-66489800	Enhancers	Fetal Heart	heart
24	chr17:66489200-66489800	Enhancers	Fetal Muscle Leg	muscle
25	chr17:66489400-66489600	Enhancers	Fetal Lung	lung
26	chr17:66489400-66489600	Enhancers	Fetal Stomach	stomach
27	chr17:66489400-66490000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr17:66489400-66490000	Enhancers	Fetal Muscle Trunk	muscle
29	chr17:66489400-66494200	Weak transcription	Left Ventricle	heart
30	chr17:66489400-66494600	Weak transcription	Right Atrium	heart

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