Variant report

Variant	rs9892343
Chromosome Location	chr17:66491379-66491380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2860302	0.80[ASN][1000 genomes]
rs2952282	0.83[ASN][1000 genomes]
rs4321253	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6501512	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7207491	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7222188	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8066131	0.93[EUR][1000 genomes]
rs8069982	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894682	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9898700	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66487200-66493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:66488200-66493400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:66488200-66493800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr17:66488200-66494600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:66488400-66493800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr17:66488400-66494400	Weak transcription	Ovary	ovary
7	chr17:66488400-66494600	Weak transcription	Gastric	stomach
8	chr17:66488600-66493200	Weak transcription	GM12878-XiMat	blood
9	chr17:66488600-66493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:66488600-66493800	Weak transcription	Spleen	Spleen
11	chr17:66488800-66493400	Weak transcription	Primary B cells from cord blood	blood
12	chr17:66488800-66493800	Weak transcription	Colonic Mucosa	Colon
13	chr17:66488800-66493800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr17:66488800-66494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr17:66488800-66494200	Weak transcription	Pancreas	Pancrea
16	chr17:66489000-66492600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr17:66489400-66494200	Weak transcription	Left Ventricle	heart
18	chr17:66489400-66494600	Weak transcription	Right Atrium	heart
19	chr17:66489600-66493800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr17:66489600-66494600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr17:66489800-66492000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:66489800-66492600	Weak transcription	Fetal Heart	heart
23	chr17:66489800-66494200	Weak transcription	Fetal Muscle Leg	muscle
24	chr17:66490000-66494200	Weak transcription	Adipose Nuclei	Adipose
25	chr17:66490400-66491800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr17:66490600-66491800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr17:66491200-66491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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