Variant report

Variant	rs2907534
Chromosome Location	chr10:117507846-117507847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117505649..117508241-chr10:117509023..117511688,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11591853	0.82[AFR][1000 genomes]
rs11598238	0.86[AFR][1000 genomes]
rs12766958	0.91[AFR][1000 genomes]
rs12767442	0.85[AFR][1000 genomes]
rs2532696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532698	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532702	0.91[ASW][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532711	0.91[ASW][hapmap];0.88[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2532715	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2620952	1.00[GIH][hapmap]
rs2804167	0.91[ASW][hapmap];0.88[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804168	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804169	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804170	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2804171	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2804174	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs2907517	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907518	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907519	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907520	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2907521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907524	0.90[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907528	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907530	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907532	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907533	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907535	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907536	1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907540	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907542	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907590	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927372	1.00[GIH][hapmap]
rs2960636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960638	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960639	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960640	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960642	0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960643	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960644	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960646	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960647	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960648	1.00[ASW][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960649	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960654	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2960693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960695	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960701	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960705	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960707	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960713	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960716	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960717	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960718	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960720	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2960721	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960731	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960733	0.96[AFR][1000 genomes]
rs3095132	0.85[AFR][1000 genomes]
rs3095133	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110772	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328148	1.00[GIH][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117490800-117509600	Weak transcription	Aorta	Aorta

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