Variant report

Variant	rs2960716
Chromosome Location	chr10:117520709-117520710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11598238	0.82[AFR][1000 genomes]
rs12766958	0.86[AFR][1000 genomes]
rs12767442	0.81[AFR][1000 genomes]
rs2532696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532698	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532702	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532708	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532711	0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2532715	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804167	0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804168	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804169	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2804171	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2804172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907517	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907518	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907519	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907520	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2907521	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907524	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907528	0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907530	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907532	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907533	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907534	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907535	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907536	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907540	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907541	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907542	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907590	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960638	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960639	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960640	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960642	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960643	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960644	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960646	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960647	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960648	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960649	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960654	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2960693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960695	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960706	0.82[AFR][1000 genomes]
rs2960707	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960713	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960717	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960718	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960721	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960731	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960733	0.92[AFR][1000 genomes]
rs3095132	0.81[AFR][1000 genomes]
rs3095133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3095135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110772	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117489400-117520800	Weak transcription	HSMM	muscle
2	chr10:117520000-117521600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:117520200-117520800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:117520200-117521000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:117520200-117521200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:117520400-117520800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:117520400-117521000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:117520600-117521000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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