Variant report

Variant	rs2908498
Chromosome Location	chr6:139763531-139763532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2005866	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2159955	0.83[CEU][hapmap];0.90[GIH][hapmap];0.82[EUR][1000 genomes]
rs2908497	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3010303	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3010308	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4410751	0.80[CHB][hapmap]
rs759103	0.91[YRI][hapmap]
rs9389685	0.80[CHB][hapmap]
rs9403076	0.80[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2908498	OLIG3	cis	cerebellum	SCAN
rs2908498	AHI1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:139758200-139764200	Weak transcription	Fetal Kidney	kidney
3	chr6:139758400-139764600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:139761000-139764800	Weak transcription	Fetal Stomach	stomach
6	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
7	chr6:139763000-139765600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:139763000-139767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:139763200-139763600	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:139763200-139763800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:139763200-139763800	Enhancers	Fetal Thymus	thymus
12	chr6:139763200-139764000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:139763200-139764400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:139763200-139765200	Flanking Active TSS	K562	blood
15	chr6:139763200-139765400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:139763400-139763800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:139763400-139766200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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