Variant report

Variant	rs9389685
Chromosome Location	chr6:139767988-139767989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139766736..139768408-chr6:139772895..139775718,3	K562	blood:
3	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
4	chr6:139765322..139769157-chr6:139769413..139772627,5	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12176137	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529425	0.88[JPT][hapmap]
rs17068684	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908498	0.80[CHB][hapmap]
rs34697255	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71549041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736945	0.94[JPT][hapmap]
rs9321722	0.91[ASN][1000 genomes]
rs9403072	0.94[JPT][hapmap]
rs9403076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9389685	GPR126	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:139764800-139768200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:139764800-139769000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:139764800-139769000	Weak transcription	NH-A	brain
5	chr6:139765000-139769000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:139765200-139768400	Weak transcription	Fetal Kidney	kidney
7	chr6:139765200-139768600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:139765200-139768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:139765200-139770600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:139765200-139772800	Weak transcription	HSMMtube	muscle
11	chr6:139765400-139769600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:139766600-139769200	Weak transcription	NHDF-Ad	bronchial
13	chr6:139767000-139769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:139767400-139769200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:139767600-139768600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:139767600-139769600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:139767600-139769800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:139767600-139771600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:139767800-139768200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:139767800-139768200	Weak transcription	Ovary	ovary
21	chr6:139767800-139768200	Enhancers	K562	blood
22	chr6:139767800-139769200	Weak transcription	Monocytes-CD14+_RO01746	blood

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