Variant report

Variant	rs12529425
Chromosome Location	chr6:139758486-139758487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694417..139698600-chr6:139753656..139760894,11	MCF-7	breast:
2	chr6:139757906..139761736-chr6:139764964..139767365,3	MCF-7	breast:
3	chr6:139757726..139758506-chr6:140200893..140201759,3	MCF-7	breast:
4	chr6:139694173..139696443-chr6:139756685..139760718,5	MCF-7	breast:
5	chr6:139757726..139758506-chr6:140200893..140201759,2	MCF-7	breast:
6	chr6:139751900..139753425-chr6:139757623..139760515,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12199070	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203368	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17068623	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17068627	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs736945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389681	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389682	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389685	0.88[JPT][hapmap]
rs9399277	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403072	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403076	0.88[JPT][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139755000-139760000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:139755200-139759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:139755200-139760400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:139755400-139759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:139755600-139760600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:139755600-139763200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:139756000-139760400	Weak transcription	K562	blood
9	chr6:139757200-139759200	Enhancers	Hela-S3	cervix
10	chr6:139757400-139758600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:139757400-139758600	Enhancers	HMEC	breast
12	chr6:139757400-139759200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:139757600-139758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:139757600-139758600	Enhancers	NHEK	skin
15	chr6:139757800-139760400	Weak transcription	Fetal Stomach	stomach
16	chr6:139758200-139760000	Enhancers	Fetal Heart	heart
17	chr6:139758200-139764200	Weak transcription	Fetal Kidney	kidney
18	chr6:139758400-139759600	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:139758400-139759600	Weak transcription	Pancreas	Pancrea
20	chr6:139758400-139763400	Weak transcription	Placenta	Placenta
21	chr6:139758400-139764600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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