Variant report

Variant	rs12203368
Chromosome Location	chr6:139748190-139748191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139746639..139749113-chr6:139772562..139774559,2	K562	blood:
2	chr6:139739085..139741490-chr6:139748016..139750335,2	K562	blood:
3	chr6:139694315..139697049-chr6:139746176..139748953,3	K562	blood:
4	chr6:139695581..139697270-chr6:139747811..139749855,2	MCF-7	breast:
5	chr6:139747336..139750821-chr6:139752106..139755148,4	K562	blood:
6	chr6:139694315..139697874-chr6:139744797..139748354,6	K562	blood:
7	chr6:139747942..139750604-chr6:139763994..139765795,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12199070	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529425	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17068623	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17068627	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs736945	0.95[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389681	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389682	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399277	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403072	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139743800-139754600	Weak transcription	Stomach Mucosa	stomach
2	chr6:139744400-139748800	Weak transcription	Pancreas	Pancrea
3	chr6:139744800-139750400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:139745600-139750200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:139746400-139748400	Enhancers	Psoas Muscle	Psoas
6	chr6:139746600-139749200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:139746800-139754600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:139747200-139748200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:139747400-139748200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:139747800-139750800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:139747800-139757400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:139748000-139748400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:139748000-139748400	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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