Variant report

Variant	rs9399277
Chromosome Location	chr6:139743084-139743085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12199070	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12203368	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529425	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17068623	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17068627	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736945	0.91[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9389681	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389682	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403072	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519810	chr6:139742788-139743807	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139741000-139743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139741000-139743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:139741200-139743200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:139741200-139743400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:139741800-139743600	Enhancers	Ovary	ovary
6	chr6:139742400-139743200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:139742400-139743400	Weak transcription	Pancreas	Pancrea
8	chr6:139742400-139744000	Enhancers	Left Ventricle	heart
9	chr6:139742400-139745600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:139743000-139743400	Weak transcription	K562	blood
11	chr6:139743000-139744800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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