Variant report

Variant	rs736945
Chromosome Location	chr6:139755715-139755716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12199070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203368	0.95[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17068623	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17068627	0.86[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389681	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9389682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389685	0.94[JPT][hapmap]
rs9399277	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403072	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403076	0.94[JPT][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139747800-139757400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:139751800-139757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:139754600-139756000	Enhancers	K562	blood
4	chr6:139755000-139756200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:139755000-139757200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:139755000-139760000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:139755200-139757400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:139755200-139757600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:139755200-139757600	Weak transcription	NH-A	brain
10	chr6:139755200-139757800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:139755200-139759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:139755200-139760400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:139755400-139757200	Weak transcription	Hela-S3	cervix
14	chr6:139755400-139759600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:139755600-139757400	Weak transcription	Fetal Heart	heart
17	chr6:139755600-139760600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:139755600-139763200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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