Variant report

Variant	rs9403076
Chromosome Location	chr6:139765981-139765982
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139754348..139756927-chr6:139762394..139767800,8	K562	blood:
3	chr6:139757906..139761736-chr6:139764964..139767365,3	MCF-7	breast:
4	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
5	chr6:139765322..139769157-chr6:139769413..139772627,5	K562	blood:
6	chr6:139762168..139766688-chr6:139768523..139772512,5	K562	blood:
7	chr6:139759810..139761994-chr6:139765167..139767391,2	K562	blood:
8	chr6:139755239..139757020-chr6:139764914..139766509,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12176137	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12529425	0.88[JPT][hapmap]
rs17068684	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2908498	0.80[CHB][hapmap]
rs34697255	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71549041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs736945	0.94[JPT][hapmap]
rs9321722	0.89[ASN][1000 genomes]
rs9389685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403072	0.94[JPT][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
3	chr6:139763000-139767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:139763400-139766200	Enhancers	Placenta	Placenta
5	chr6:139764000-139766800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:139764800-139768200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:139764800-139769000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:139764800-139769000	Weak transcription	NH-A	brain
9	chr6:139765000-139766200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:139765000-139766200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:139765000-139766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:139765000-139769000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:139765200-139766000	Enhancers	K562	blood
14	chr6:139765200-139766600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:139765200-139768400	Weak transcription	Fetal Kidney	kidney
16	chr6:139765200-139768600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:139765200-139768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:139765200-139770600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:139765200-139772800	Weak transcription	HSMMtube	muscle
20	chr6:139765400-139766400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:139765400-139766400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:139765400-139769600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:139765600-139766000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:139765600-139766000	Weak transcription	NHDF-Ad	bronchial
25	chr6:139765800-139767600	Weak transcription	Ovary	ovary

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