Variant report

Variant	rs2909880
Chromosome Location	chr5:107408395-107408396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs158189	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs169640	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs176384	0.89[EUR][1000 genomes]
rs192617	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs286748	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs286752	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs286755	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs286757	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286783	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs286786	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs286788	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs286790	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs286811	0.82[EUR][1000 genomes]
rs286812	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs286820	0.84[EUR][1000 genomes]
rs288130	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288140	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288148	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288150	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288153	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs288155	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs288156	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288158	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs288162	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288163	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs288165	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs288166	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs288167	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs288176	0.93[EUR][1000 genomes]
rs288182	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs289234	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2909879	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2909882	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34416	0.85[EUR][1000 genomes]
rs34417	0.86[EUR][1000 genomes]
rs34418	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34430	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs40062	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs40072	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs455394	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs502790	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107404000-107410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107406200-107413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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