Variant report

Variant	rs40072
Chromosome Location	chr5:107467243-107467244
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10040007	1.00[CHB][hapmap]
rs10045002	1.00[CHB][hapmap]
rs10070927	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10071499	1.00[CHB][hapmap]
rs158171	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs158174	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs158176	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158177	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158178	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158180	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158182	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158183	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158184	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158185	0.90[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158187	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158189	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs171756	1.00[CHB][hapmap]
rs192617	0.82[EUR][1000 genomes]
rs286740	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs286742	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs286748	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286752	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286757	0.81[EUR][1000 genomes]
rs286763	0.84[ASN][1000 genomes]
rs286778	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs286783	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs286786	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286788	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286790	0.84[EUR][1000 genomes]
rs286796	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs286797	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs286798	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs286801	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs286803	0.95[EUR][1000 genomes]
rs286804	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286807	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286810	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286814	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286816	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs286819	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288130	0.82[EUR][1000 genomes]
rs288140	0.82[EUR][1000 genomes]
rs288148	0.82[EUR][1000 genomes]
rs288150	0.82[EUR][1000 genomes]
rs288153	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs288155	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs288156	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs288158	0.81[CEU][hapmap]
rs288162	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs288163	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs288165	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs288166	0.81[EUR][1000 genomes]
rs288167	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs288174	1.00[CHB][hapmap]
rs288176	1.00[CHB][hapmap]
rs289234	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs2909879	0.82[EUR][1000 genomes]
rs2909880	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2909882	0.81[EUR][1000 genomes]
rs2910791	1.00[CHB][hapmap]
rs2922408	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2922425	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2922431	1.00[CHB][hapmap]
rs2966788	1.00[CHB][hapmap]
rs2966800	1.00[CHB][hapmap]
rs2966803	1.00[CHB][hapmap]
rs2966820	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2966821	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2966823	1.00[CHB][hapmap]
rs2966825	1.00[CHB][hapmap]
rs2966827	0.84[ASN][1000 genomes]
rs2966829	1.00[CHB][hapmap]
rs34386	1.00[CHB][hapmap]
rs34387	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34411	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34417	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs34418	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34426	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34429	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs40062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40063	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40065	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs40066	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs41130	0.81[AMR][1000 genomes]
rs4395619	0.84[ASN][1000 genomes]
rs455394	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4957551	1.00[CHB][hapmap]
rs502790	0.82[EUR][1000 genomes]
rs6594295	1.00[CHB][hapmap]
rs6863456	1.00[CHB][hapmap]
rs6880727	1.00[CHB][hapmap]
rs7706429	1.00[CHB][hapmap]
rs7727051	1.00[CHB][hapmap]
rs7733311	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107465600-107469200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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