Variant report

Variant	rs34431
Chromosome Location	chr5:107465831-107465832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs158171	0.81[ASN][1000 genomes]
rs158189	0.87[ASN][1000 genomes]
rs286740	0.81[ASN][1000 genomes]
rs286778	0.82[AMR][1000 genomes]
rs286798	0.85[AMR][1000 genomes]
rs286803	0.87[EUR][1000 genomes]
rs286811	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs286812	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs286816	0.81[EUR][1000 genomes]
rs286819	0.82[EUR][1000 genomes]
rs286820	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34412	0.85[AMR][1000 genomes]
rs34416	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34417	0.89[EUR][1000 genomes]
rs34418	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34426	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34430	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs40062	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs40072	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107449000-107467200	Weak transcription	Aorta	Aorta
3	chr5:107465600-107469200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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