Variant report

Variant	rs286803
Chromosome Location	chr5:107467915-107467916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs158171	0.83[AMR][1000 genomes]
rs158174	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs158176	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158177	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs158178	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158180	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158182	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158183	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158184	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158185	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158187	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs182288	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs286740	0.85[AMR][1000 genomes]
rs286742	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs286797	0.85[AMR][1000 genomes]
rs286801	0.85[AMR][1000 genomes]
rs286804	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286807	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286810	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs286811	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs286812	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs286813	0.84[AFR][1000 genomes]
rs286814	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs286816	0.86[EUR][1000 genomes]
rs286819	0.87[EUR][1000 genomes]
rs286820	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34411	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34412	0.81[EUR][1000 genomes]
rs34416	0.91[EUR][1000 genomes]
rs34417	0.92[EUR][1000 genomes]
rs34418	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34429	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34430	0.95[EUR][1000 genomes]
rs34431	0.87[EUR][1000 genomes]
rs40062	0.94[EUR][1000 genomes]
rs40063	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs40072	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107465600-107469200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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