Variant report

Variant	rs158174
Chromosome Location	chr5:107475715-107475716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10040007	1.00[CHB][hapmap]
rs10045002	1.00[CHB][hapmap]
rs10070927	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10071499	1.00[CHB][hapmap]
rs158169	0.81[AMR][1000 genomes]
rs158171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158176	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158177	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158178	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158180	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158182	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158183	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158184	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158185	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158187	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169640	0.82[CHD][hapmap]
rs171756	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs182288	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2076794	1.00[CHB][hapmap]
rs286740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286748	0.82[CHD][hapmap]
rs286763	0.84[ASN][1000 genomes]
rs286770	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs286778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286803	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs286804	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286807	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286810	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.99[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286811	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs286812	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs286813	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs286814	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286816	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs286819	1.00[ASN][1000 genomes]
rs286820	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs288140	0.82[CHD][hapmap]
rs288174	1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap]
rs288176	1.00[CHB][hapmap]
rs288182	0.81[CHD][hapmap]
rs2909879	0.82[CHD][hapmap]
rs2909882	0.82[CHD][hapmap]
rs2910791	1.00[CHB][hapmap]
rs2922408	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2922425	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2922431	1.00[CHB][hapmap]
rs2966788	1.00[CHB][hapmap]
rs2966800	1.00[CHB][hapmap]
rs2966803	1.00[CHB][hapmap]
rs2966820	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2966821	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2966823	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap]
rs2966825	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2966827	0.84[ASN][1000 genomes]
rs2966828	1.00[CHD][hapmap]
rs2966829	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2966833	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs34386	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34387	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34411	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416	0.97[ASN][1000 genomes]
rs34417	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs34418	0.84[CEU][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs34425	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34426	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34430	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs40062	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs40063	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40065	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs40066	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs40072	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41130	0.83[EUR][1000 genomes]
rs4395619	0.84[ASN][1000 genomes]
rs466018	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4957551	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap]
rs502790	0.82[CHD][hapmap]
rs6594295	1.00[CHB][hapmap]
rs6863456	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap]
rs6880727	1.00[CHB][hapmap]
rs7706429	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap]
rs7727051	1.00[CHB][hapmap]
rs7733311	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107471000-107477400	Weak transcription	Psoas Muscle	Psoas
3	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107475000-107476000	Enhancers	Aorta	Aorta
5	chr5:107475000-107482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:107475200-107527400	Weak transcription	Liver	Liver
7	chr5:107475600-107479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:107475600-107479000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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