Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs158174	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs158176	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158177	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs158178	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158180	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158182	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158183	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158184	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158185	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs158187	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs182288	0.81[AMR][1000 genomes]
rs286740	0.82[AMR][1000 genomes]
rs286742	0.84[AMR][1000 genomes]
rs286797	0.82[AMR][1000 genomes]
rs286801	0.82[AMR][1000 genomes]
rs286803	0.84[AFR][1000 genomes]
rs286804	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286807	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286810	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286814	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34411	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34412	0.83[EUR][1000 genomes]
rs34429	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs40063	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107437400-107445400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:107437800-107446000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:107437800-107447600	Weak transcription	Right Atrium	heart
7	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
8	chr5:107438400-107446000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:107438400-107447600	Weak transcription	Pancreas	Pancrea
10	chr5:107438400-107448800	Weak transcription	Left Ventricle	heart
11	chr5:107440000-107445800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:107440600-107450200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:107441200-107455000	Weak transcription	Psoas Muscle	Psoas
14	chr5:107441800-107457400	Weak transcription	Primary hematopoietic stem cells	blood

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