Variant report

Variant	rs34412
Chromosome Location	chr5:107470647-107470648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107460221..107462771-chr5:107469152..107471669,2	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10040007	1.00[CHB][hapmap]
rs10045002	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10055322	0.84[EUR][1000 genomes]
rs10065168	0.81[EUR][1000 genomes]
rs10070927	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10071499	1.00[CHB][hapmap]
rs158168	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs158169	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs158171	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158176	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158180	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158183	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158184	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158185	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158187	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158189	1.00[CHB][hapmap]
rs169640	1.00[CHB][hapmap]
rs171756	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs182288	0.88[EUR][1000 genomes]
rs192617	1.00[CHB][hapmap]
rs286740	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286748	1.00[CHB][hapmap]
rs286752	1.00[CHB][hapmap]
rs286755	1.00[CHB][hapmap]
rs286763	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286770	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs286778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286783	1.00[CHB][hapmap]
rs286786	1.00[CHB][hapmap]
rs286788	1.00[CHB][hapmap]
rs286796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286798	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286803	0.81[EUR][1000 genomes]
rs286804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286807	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286813	0.83[EUR][1000 genomes]
rs286814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286816	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs286819	1.00[ASN][1000 genomes]
rs286820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288140	1.00[CHB][hapmap]
rs288153	1.00[CHB][hapmap]
rs288155	1.00[CHB][hapmap]
rs288156	1.00[CHB][hapmap]
rs288158	1.00[CHB][hapmap]
rs288162	1.00[CHB][hapmap]
rs288163	1.00[CHB][hapmap]
rs288165	1.00[CHB][hapmap]
rs288166	1.00[CHB][hapmap]
rs288167	1.00[CHB][hapmap]
rs288174	1.00[CHB][hapmap]
rs288176	1.00[CHB][hapmap]
rs289234	1.00[CHB][hapmap]
rs2909879	1.00[CHB][hapmap]
rs2909882	1.00[CHB][hapmap]
rs2910791	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922408	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2922417	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922418	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922421	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922422	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922425	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2922431	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2922432	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2941698	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2966788	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2966793	0.82[EUR][1000 genomes]
rs2966796	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966800	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966802	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966803	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966804	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966813	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966814	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966818	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2966820	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966821	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966822	0.81[EUR][1000 genomes]
rs2966823	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2966825	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2966827	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966828	1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2966829	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34386	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34417	0.82[EUR][1000 genomes]
rs34418	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34426	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34429	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431	0.85[AMR][1000 genomes]
rs40062	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40065	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs40066	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs40072	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41130	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4395619	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs466018	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4957551	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs5005385	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs502790	1.00[CHB][hapmap]
rs6594295	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6863456	1.00[CHB][hapmap]
rs6880727	1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7706429	1.00[CHB][hapmap]
rs7727051	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs7733311	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107468600-107475000	Weak transcription	Aorta	Aorta
3	chr5:107470600-107471600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107470600-107475000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links