Variant report

Variant	rs10055322
Chromosome Location	chr5:107575512-107575513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10040007	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10045002	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10057896	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10065168	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10070927	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071499	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10075370	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10077527	0.91[EUR][1000 genomes]
rs10477887	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs158168	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158169	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs158171	0.81[ASN][1000 genomes]
rs158176	0.83[EUR][1000 genomes]
rs158177	0.82[EUR][1000 genomes]
rs158178	0.83[EUR][1000 genomes]
rs158180	0.83[EUR][1000 genomes]
rs158182	0.83[EUR][1000 genomes]
rs158183	0.82[EUR][1000 genomes]
rs158184	0.82[EUR][1000 genomes]
rs158185	0.82[EUR][1000 genomes]
rs158187	0.80[EUR][1000 genomes]
rs171756	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1833562	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076794	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2122156	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs286740	0.81[ASN][1000 genomes]
rs286763	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286770	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286804	0.83[EUR][1000 genomes]
rs286807	0.83[EUR][1000 genomes]
rs286810	0.83[EUR][1000 genomes]
rs286814	0.82[EUR][1000 genomes]
rs2909791	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910791	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922408	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2922417	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922418	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922421	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922422	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2922425	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2922431	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2922432	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2941698	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2966788	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2966793	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966796	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2966800	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966802	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966803	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966804	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966813	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966814	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966816	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2966818	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966820	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966821	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966822	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966823	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966825	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966827	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966828	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966829	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966831	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966833	0.94[ASN][1000 genomes]
rs34386	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34387	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34411	0.83[EUR][1000 genomes]
rs34412	0.84[EUR][1000 genomes]
rs34426	0.81[ASN][1000 genomes]
rs34429	0.83[EUR][1000 genomes]
rs40063	0.83[EUR][1000 genomes]
rs40065	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs40066	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41130	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4395619	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs466018	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4957551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005385	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62359548	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6594295	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6863456	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6869057	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6880727	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6881879	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6885988	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706429	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7727051	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7733311	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885545	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882685	chr5:107564746-107695558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:107547000-107577200	Weak transcription	Fetal Intestine Large	intestine
4	chr5:107549200-107578000	Weak transcription	Pancreas	Pancrea
5	chr5:107552000-107578800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:107552000-107585000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:107553000-107584800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:107553400-107590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:107556400-107580200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:107558000-107581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:107561400-107595000	Weak transcription	Psoas Muscle	Psoas
12	chr5:107561800-107576000	Weak transcription	Fetal Intestine Small	intestine
13	chr5:107564200-107580400	Weak transcription	Ovary	ovary
14	chr5:107566600-107578400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr5:107567800-107578000	Weak transcription	Aorta	Aorta
16	chr5:107574000-107582000	Weak transcription	Spleen	Spleen
17	chr5:107574800-107575600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:107574800-107575800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr5:107574800-107575800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:107574800-107575800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:107575000-107575600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:107575000-107575600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:107575000-107575600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr5:107575000-107575600	Enhancers	Fetal Heart	heart
25	chr5:107575000-107575600	Enhancers	Left Ventricle	heart
26	chr5:107575000-107575600	Enhancers	Stomach Smooth Muscle	stomach
27	chr5:107575000-107575800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:107575000-107577000	Strong transcription	Primary T cells from cord blood	blood
29	chr5:107575200-107575600	Enhancers	Lung	lung
30	chr5:107575200-107575600	Enhancers	Right Ventricle	heart
31	chr5:107575200-107575800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:107575200-107575800	Enhancers	Brain Anterior Caudate	brain
33	chr5:107575200-107596200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:107575400-107575800	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr5:107575400-107575800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr5:107575400-107576400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:107575400-107617600	Weak transcription	Primary B cells from cord blood	blood

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