Variant report

Variant	rs158183
Chromosome Location	chr5:107442047-107442048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107436261..107438688-chr5:107440363..107442788,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10055322	0.82[EUR][1000 genomes]
rs10070927	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs158168	0.80[EUR][1000 genomes]
rs158169	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs158171	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158174	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158176	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158177	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158178	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158180	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158182	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158184	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158187	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171756	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs182288	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs286740	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286742	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286763	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286770	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs286778	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286796	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286797	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286798	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286801	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286803	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs286804	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286807	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286810	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286811	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286812	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286813	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286814	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286819	1.00[ASN][1000 genomes]
rs286820	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910791	0.82[EUR][1000 genomes]
rs2922408	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2922417	0.82[EUR][1000 genomes]
rs2922418	0.82[EUR][1000 genomes]
rs2922421	0.82[EUR][1000 genomes]
rs2922422	0.81[EUR][1000 genomes]
rs2922425	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2922431	0.82[EUR][1000 genomes]
rs2922432	0.82[EUR][1000 genomes]
rs2966793	0.81[EUR][1000 genomes]
rs2966796	0.81[EUR][1000 genomes]
rs2966800	0.82[EUR][1000 genomes]
rs2966802	0.82[EUR][1000 genomes]
rs2966803	0.82[EUR][1000 genomes]
rs2966804	0.82[EUR][1000 genomes]
rs2966813	0.81[EUR][1000 genomes]
rs2966814	0.82[EUR][1000 genomes]
rs2966818	0.81[EUR][1000 genomes]
rs2966820	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966821	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966827	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966828	0.81[EUR][1000 genomes]
rs2966829	0.80[EUR][1000 genomes]
rs34386	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34387	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34411	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34412	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34417	0.84[EUR][1000 genomes]
rs34418	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34425	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34426	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34429	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34430	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40062	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40063	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40065	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs40066	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs40072	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41130	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4395619	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs466018	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4957551	0.81[EUR][1000 genomes]
rs5005385	0.81[EUR][1000 genomes]
rs7727051	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107437400-107445400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:107437800-107446000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:107437800-107447600	Weak transcription	Right Atrium	heart
7	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
8	chr5:107438400-107442800	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:107438400-107446000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:107438400-107447600	Weak transcription	Pancreas	Pancrea
11	chr5:107438400-107448800	Weak transcription	Left Ventricle	heart
12	chr5:107439800-107442200	Weak transcription	Ovary	ovary
13	chr5:107440000-107445800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:107440600-107450200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:107441200-107455000	Weak transcription	Psoas Muscle	Psoas
16	chr5:107441800-107457400	Weak transcription	Primary hematopoietic stem cells	blood

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