Variant report

Variant	rs40066
Chromosome Location	chr5:107515701-107515702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10040007	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10045002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10055322	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10057896	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10065168	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10070927	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071499	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075370	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10077527	0.89[EUR][1000 genomes]
rs10477887	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs158168	0.84[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158169	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158171	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs158174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs158176	0.89[EUR][1000 genomes]
rs158177	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs158178	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs158180	0.89[EUR][1000 genomes]
rs158182	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs158183	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs158184	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs158185	0.80[CEU][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs158187	0.86[EUR][1000 genomes]
rs169640	0.82[CHD][hapmap];0.86[MEX][hapmap]
rs171756	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833562	0.90[EUR][1000 genomes]
rs2076794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2122156	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs286740	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs286742	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs286748	0.82[CHD][hapmap];0.86[MEX][hapmap]
rs286763	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286770	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286778	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs286796	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs286797	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs286798	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs286801	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs286804	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs286807	0.89[EUR][1000 genomes]
rs286810	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs286811	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[TSI][hapmap]
rs286812	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[TSI][hapmap]
rs286814	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs286816	1.00[CHB][hapmap]
rs286820	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs288140	0.82[CHD][hapmap]
rs288174	1.00[CHB][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap]
rs288176	1.00[CHB][hapmap]
rs288182	0.81[CHD][hapmap]
rs2909791	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2909879	0.82[CHD][hapmap]
rs2909882	0.82[CHD][hapmap];0.86[MEX][hapmap]
rs2910791	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922408	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2922417	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922418	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922421	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2922422	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2922425	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2922431	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2922432	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2941698	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2966788	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2966793	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966796	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2966800	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966802	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966803	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966804	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966813	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966814	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966816	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2966818	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966820	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966821	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966822	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966823	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966825	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966827	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966828	0.84[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2966829	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966831	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966833	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs34386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34411	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs34412	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34417	0.83[TSI][hapmap]
rs34418	0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs34425	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34426	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34429	0.89[EUR][1000 genomes]
rs34430	1.00[CHB][hapmap]
rs40062	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes]
rs40063	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs40065	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40072	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs41130	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395619	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs466018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957551	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5005385	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs502790	0.82[CHD][hapmap];0.86[MEX][hapmap]
rs62359548	0.90[EUR][1000 genomes]
rs6594295	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6863456	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6869057	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs6880727	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6881879	0.80[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs6885988	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7706429	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7727051	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7733311	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9885545	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107475200-107527400	Weak transcription	Liver	Liver
2	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
3	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:107492200-107519800	Weak transcription	Ovary	ovary
5	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
6	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
7	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107505600-107521800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:107506200-107518400	Weak transcription	Psoas Muscle	Psoas
11	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107506600-107522800	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:107506600-107524600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:107508400-107523400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:107510000-107520800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:107510600-107532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:107510800-107521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:107511000-107528000	Weak transcription	Fetal Intestine Small	intestine
19	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
20	chr5:107512800-107519800	Weak transcription	Fetal Stomach	stomach
21	chr5:107514800-107522800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:107515000-107519200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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