Variant report

Variant	rs2966816
Chromosome Location	chr5:107546396-107546397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10040007	0.83[EUR][1000 genomes]
rs10055322	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10057896	0.83[EUR][1000 genomes]
rs10065168	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10070927	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10071499	0.83[EUR][1000 genomes]
rs10075370	0.83[EUR][1000 genomes]
rs10077527	0.82[EUR][1000 genomes]
rs10477887	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs158168	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs171756	0.84[EUR][1000 genomes]
rs1833562	0.82[EUR][1000 genomes]
rs2076794	0.82[EUR][1000 genomes]
rs2122156	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs286763	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs286770	0.82[EUR][1000 genomes]
rs2909791	0.83[EUR][1000 genomes]
rs2910791	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922408	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922417	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922418	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922421	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922422	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2922425	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922431	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2922432	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2941698	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2966796	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2966800	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2966802	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966803	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966804	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2966813	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2966814	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2966818	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2966820	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2966821	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966822	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966823	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966825	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966827	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966828	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966829	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2966831	0.82[EUR][1000 genomes]
rs34386	0.81[EUR][1000 genomes]
rs34387	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs40065	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs40066	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41130	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4395619	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs466018	0.82[EUR][1000 genomes]
rs4957551	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5005385	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62359548	0.82[EUR][1000 genomes]
rs6594295	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6863456	0.83[EUR][1000 genomes]
rs6869057	0.83[EUR][1000 genomes]
rs6880727	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6881879	0.83[EUR][1000 genomes]
rs6885988	0.84[EUR][1000 genomes]
rs7706429	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7727051	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7733311	0.82[EUR][1000 genomes]
rs9885545	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
2	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:107526000-107550800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:107535400-107548600	Weak transcription	Fetal Heart	heart
8	chr5:107536000-107548000	Weak transcription	Left Ventricle	heart
9	chr5:107536800-107548200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:107537000-107550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:107539400-107551000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:107544200-107550600	Weak transcription	Liver	Liver
13	chr5:107546200-107553200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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