Variant report

Variant	rs10077527
Chromosome Location	chr5:107713056-107713057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:107705977..107708184-chr5:107711910..107713807,2	MCF-7	breast:
2	chr5:107705544..107707049-chr5:107712715..107714654,2	K562	blood:
3	chr5:107704058..107705992-chr5:107711279..107713882,3	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10040007	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10045002	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10055322	0.91[EUR][1000 genomes]
rs10057896	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10065168	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10070927	0.93[EUR][1000 genomes]
rs10071499	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075370	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10477887	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13361152	0.83[AFR][1000 genomes]
rs158168	0.92[EUR][1000 genomes]
rs158169	0.86[EUR][1000 genomes]
rs171756	0.90[EUR][1000 genomes]
rs1833562	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2076794	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2122156	0.85[EUR][1000 genomes]
rs286763	0.93[EUR][1000 genomes]
rs286770	0.89[EUR][1000 genomes]
rs2909791	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2910791	0.94[EUR][1000 genomes]
rs2922408	0.93[EUR][1000 genomes]
rs2922417	0.94[EUR][1000 genomes]
rs2922418	0.94[EUR][1000 genomes]
rs2922421	0.94[EUR][1000 genomes]
rs2922422	0.93[EUR][1000 genomes]
rs2922425	0.94[EUR][1000 genomes]
rs2922431	0.94[EUR][1000 genomes]
rs2922432	0.94[EUR][1000 genomes]
rs2941698	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2966788	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2966793	0.93[EUR][1000 genomes]
rs2966796	0.93[EUR][1000 genomes]
rs2966800	0.94[EUR][1000 genomes]
rs2966802	0.94[EUR][1000 genomes]
rs2966803	0.94[EUR][1000 genomes]
rs2966804	0.94[EUR][1000 genomes]
rs2966813	0.93[EUR][1000 genomes]
rs2966814	0.94[EUR][1000 genomes]
rs2966816	0.82[EUR][1000 genomes]
rs2966818	0.91[EUR][1000 genomes]
rs2966820	0.93[EUR][1000 genomes]
rs2966821	0.93[EUR][1000 genomes]
rs2966822	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966823	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966825	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966827	0.93[EUR][1000 genomes]
rs2966828	0.93[EUR][1000 genomes]
rs2966829	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966831	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2966833	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34386	0.88[EUR][1000 genomes]
rs40065	0.89[EUR][1000 genomes]
rs40066	0.89[EUR][1000 genomes]
rs41130	0.89[EUR][1000 genomes]
rs4395619	0.93[EUR][1000 genomes]
rs466018	0.89[EUR][1000 genomes]
rs4957551	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5005385	0.93[EUR][1000 genomes]
rs62359548	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594295	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6863456	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6869057	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6880727	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6881879	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885988	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706429	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7727051	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7733311	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7736039	0.80[EUR][1000 genomes]
rs9885545	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882688	chr5:107595383-107715746	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107697200-107715200	Weak transcription	HSMM	muscle
2	chr5:107698200-107715600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:107706400-107714200	Weak transcription	Left Ventricle	heart
4	chr5:107708600-107716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:107709600-107713800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:107709600-107714200	Weak transcription	Gastric	stomach
7	chr5:107709600-107715600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:107709600-107715600	Weak transcription	Thymus	Thymus
9	chr5:107709600-107716000	Weak transcription	Ovary	ovary
10	chr5:107709800-107715200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:107710000-107715600	Weak transcription	HSMMtube	muscle
12	chr5:107710200-107714400	Weak transcription	Primary T cells from cord blood	blood
13	chr5:107711000-107715600	Weak transcription	Fetal Thymus	thymus
14	chr5:107711400-107714200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:107711400-107715600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:107711600-107714200	Weak transcription	Psoas Muscle	Psoas
17	chr5:107711600-107715200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:107711800-107714200	Weak transcription	Small Intestine	intestine
19	chr5:107711800-107714800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:107712000-107714600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:107712000-107715000	Weak transcription	Fetal Lung	lung
22	chr5:107712000-107715400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:107712200-107714000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:107712200-107714400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:107712200-107715000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:107712200-107715000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr5:107712200-107715000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr5:107712200-107715600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:107712400-107714800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:107712400-107715400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr5:107712600-107713600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr5:107712800-107713200	Enhancers	Right Ventricle	heart
33	chr5:107712800-107713400	ZNF genes & repeats	GM12878-XiMat	blood
34	chr5:107712800-107714000	Enhancers	Fetal Heart	heart
35	chr5:107713000-107713200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:107713000-107714200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr5:107713000-107715000	Weak transcription	Primary B cells from cord blood	blood

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