Variant report

Variant	rs288176
Chromosome Location	chr5:107351728-107351729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10070927	1.00[CHB][hapmap]
rs158171	1.00[CHB][hapmap]
rs158174	1.00[CHB][hapmap]
rs158177	1.00[CHB][hapmap]
rs158178	1.00[CHB][hapmap]
rs158182	1.00[CHB][hapmap]
rs158185	1.00[CHB][hapmap]
rs158189	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs169640	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171756	1.00[CHB][hapmap]
rs176384	0.87[EUR][1000 genomes]
rs192617	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286740	1.00[CHB][hapmap]
rs286742	1.00[CHB][hapmap]
rs286748	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286752	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286755	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286757	0.91[EUR][1000 genomes]
rs286778	1.00[CHB][hapmap]
rs286783	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286786	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286788	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286790	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286796	1.00[CHB][hapmap]
rs286797	1.00[CHB][hapmap]
rs286798	1.00[CHB][hapmap]
rs286801	1.00[CHB][hapmap]
rs286804	1.00[CHB][hapmap]
rs286810	1.00[CHB][hapmap]
rs286811	1.00[CHB][hapmap]
rs286812	1.00[CHB][hapmap]
rs286814	1.00[CHB][hapmap]
rs286816	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs286820	1.00[CHB][hapmap]
rs288130	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288140	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs288148	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs288150	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288153	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288155	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288156	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288158	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288162	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288163	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288165	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288166	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288167	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288174	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs288182	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288186	1.00[JPT][hapmap]
rs289234	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2909879	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2909880	0.93[EUR][1000 genomes]
rs2909882	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2922408	1.00[CHB][hapmap]
rs2966820	1.00[CHB][hapmap]
rs2966821	1.00[CHB][hapmap]
rs34386	1.00[CHB][hapmap]
rs34387	1.00[CHB][hapmap]
rs34411	1.00[CHB][hapmap]
rs34412	1.00[CHB][hapmap]
rs34425	1.00[CHB][hapmap]
rs34430	1.00[CHB][hapmap]
rs40062	1.00[CHB][hapmap]
rs40063	1.00[CHB][hapmap]
rs40065	1.00[CHB][hapmap]
rs40066	1.00[CHB][hapmap]
rs40072	1.00[CHB][hapmap]
rs455394	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs502790	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3450989	chr5:107351590-107351764	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
9	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
11	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
13	chr5:107349800-107351800	Weak transcription	Dnd41	blood
14	chr5:107349800-107353400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:107350600-107353000	Weak transcription	Fetal Intestine Large	intestine
16	chr5:107350600-107353400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:107350800-107356200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:107351400-107351800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:107351400-107355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:107351600-107354000	Weak transcription	Placenta	Placenta

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