Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs158189	0.82[JPT][hapmap]
rs169640	0.82[JPT][hapmap]
rs17165768	0.85[JPT][hapmap]
rs17437916	0.85[JPT][hapmap]
rs192617	0.82[JPT][hapmap]
rs286748	0.82[JPT][hapmap]
rs286752	0.82[JPT][hapmap]
rs286755	0.82[JPT][hapmap]
rs286783	0.82[JPT][hapmap]
rs286786	0.82[JPT][hapmap]
rs286788	0.82[JPT][hapmap]
rs288140	0.82[JPT][hapmap]
rs288153	0.82[JPT][hapmap]
rs288155	0.82[JPT][hapmap]
rs288156	0.82[JPT][hapmap]
rs288158	0.82[JPT][hapmap]
rs288162	0.82[JPT][hapmap]
rs288163	0.82[JPT][hapmap]
rs288165	0.82[JPT][hapmap]
rs288166	0.82[JPT][hapmap]
rs288167	0.82[JPT][hapmap]
rs288174	0.85[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs288176	1.00[JPT][hapmap]
rs288182	0.82[JPT][hapmap]
rs288185	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs289234	0.82[JPT][hapmap]
rs2909879	0.82[JPT][hapmap]
rs2909882	0.82[JPT][hapmap]
rs502790	0.82[JPT][hapmap]
rs6893313	0.85[JPT][hapmap]
rs7713778	0.85[JPT][hapmap]
rs7727208	0.85[JPT][hapmap]
rs7735846	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
12	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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