Variant report

Variant	rs6893313
Chromosome Location	chr5:107305829-107305830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17165768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17437916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288186	0.85[JPT][hapmap]
rs288189	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4144477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
2	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107303200-107309200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:107303600-107306000	Enhancers	NHDF-Ad	bronchial
10	chr5:107303600-107306400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:107303800-107306000	Enhancers	Osteobl	bone
12	chr5:107303800-107306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:107304600-107306000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:107305000-107306200	Weak transcription	Aorta	Aorta
16	chr5:107305000-107313400	Weak transcription	Gastric	stomach
17	chr5:107305200-107310000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:107305400-107306000	Enhancers	Fetal Brain Male	brain
19	chr5:107305400-107306600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:107305400-107313600	Weak transcription	NHEK	skin
21	chr5:107305600-107306000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:107305600-107306000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:107305600-107307400	Weak transcription	Fetal Heart	heart
24	chr5:107305800-107306400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:107305800-107307800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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