Variant report

Variant	rs17372250
Chromosome Location	chr5:107303081-107303082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11953823	1.00[JPT][hapmap]
rs13163255	0.85[CHD][hapmap]
rs17165768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17437916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs288189	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4144477	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6893313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7713778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7719403	1.00[JPT][hapmap]
rs7727208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7735846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107300400-107303200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:107301000-107305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:107302000-107303200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:107302400-107303600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:107302600-107304000	Weak transcription	HUVEC	blood vessel
16	chr5:107303000-107305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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