Variant report

Variant	rs17165768
Chromosome Location	chr5:107304523-107304524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13163255	0.85[CHD][hapmap]
rs17372250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17437916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288186	0.85[JPT][hapmap]
rs288189	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4144477	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6893313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735846	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107301000-107305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107303000-107305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:107303200-107309200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:107303600-107304600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:107303600-107306000	Enhancers	NHDF-Ad	bronchial
15	chr5:107303600-107306400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:107303800-107305000	Enhancers	NHLF	lung
17	chr5:107303800-107306000	Enhancers	Osteobl	bone
18	chr5:107303800-107306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:107304000-107305000	Enhancers	HUVEC	blood vessel
20	chr5:107304000-107305400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:107304000-107305800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr5:107304400-107305000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:107304400-107305000	Enhancers	HMEC	breast
25	chr5:107304400-107305200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:107304400-107305600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:107304400-107305800	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links