Variant report

Variant	rs13163255
Chromosome Location	chr5:107271524-107271525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11953823	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11959575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17165768	0.85[CHD][hapmap]
rs17372250	0.85[CHD][hapmap]
rs17437916	0.85[CHD][hapmap]
rs34168420	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35825055	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62361131	0.86[ASN][1000 genomes]
rs7719403	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs7735846	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv969971	chr5:107271363-107275367	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107267400-107273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:107267800-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:107268600-107273800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:107268800-107273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107268800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107269800-107273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood
12	chr5:107270800-107272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:107271000-107271600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:107271000-107271800	Enhancers	Fetal Brain Male	brain
15	chr5:107271000-107273600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:107271000-107273800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:107271000-107274400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:107271200-107271600	Enhancers	Fetal Brain Female	brain
19	chr5:107271200-107273400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:107271200-107274600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:107271400-107271600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr5:107271400-107271600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:107271400-107271600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:107271400-107273600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:107271400-107274200	Enhancers	HepG2	liver

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