Variant report

Variant	rs7719403
Chromosome Location	chr5:107274258-107274259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11953823	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs11959575	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs13163255	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs17372250	1.00[JPT][hapmap]
rs34168420	0.86[ASN][1000 genomes]
rs35825055	0.86[ASN][1000 genomes]
rs62361131	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv969971	chr5:107271363-107275367	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:107271000-107274400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107271200-107274600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:107272800-107274600	Enhancers	Fetal Brain Female	brain
7	chr5:107273000-107275000	Enhancers	Fetal Lung	lung
8	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:107273600-107274400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:107273600-107275200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:107273600-107276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:107273600-107287800	Weak transcription	Gastric	stomach
13	chr5:107273800-107275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:107273800-107276200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:107273800-107279600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
17	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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