Variant report

Variant	rs62361131
Chromosome Location	chr5:107288931-107288932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11953823	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11959575	0.81[ASN][1000 genomes]
rs13163255	0.86[ASN][1000 genomes]
rs34168420	0.86[ASN][1000 genomes]
rs35825055	0.86[ASN][1000 genomes]
rs7719403	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
2	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:107286000-107290000	Weak transcription	NHDF-Ad	bronchial
7	chr5:107286800-107291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107287400-107290000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107287400-107292000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:107287400-107294200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
13	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
14	chr5:107287600-107293200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
16	chr5:107287800-107291000	Weak transcription	Dnd41	blood
17	chr5:107288600-107291000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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