Variant report

Variant	rs2910708
Chromosome Location	chr5:37818369-37818370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2910712	0.87[ASN][1000 genomes]
rs2910713	0.88[ASN][1000 genomes]
rs2973048	0.97[ASN][1000 genomes]
rs2973049	0.98[ASN][1000 genomes]
rs2973050	0.98[ASN][1000 genomes]
rs2973051	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37812200-37822200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:37813400-37824400	Weak transcription	Fetal Kidney	kidney
3	chr5:37815000-37822200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:37815800-37830600	Weak transcription	Ovary	ovary
5	chr5:37816200-37834000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:37816400-37822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:37816600-37818400	Enhancers	Rectal Smooth Muscle	rectum
8	chr5:37816800-37823000	Weak transcription	NHEK	skin
9	chr5:37816800-37830600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:37816800-37831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:37817000-37821800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:37817000-37831800	Weak transcription	NH-A	brain
13	chr5:37817200-37825400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:37817400-37818800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:37817400-37820000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:37817400-37823200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:37817400-37823400	Weak transcription	HSMM	muscle
18	chr5:37817400-37824000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:37817400-37824000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:37817400-37826800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:37817400-37831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:37817600-37818400	Genic enhancers	Fetal Stomach	stomach
23	chr5:37817600-37818800	Weak transcription	HSMMtube	muscle
24	chr5:37817600-37819600	Strong transcription	NHDF-Ad	bronchial
25	chr5:37817800-37818400	Strong transcription	Stomach Smooth Muscle	stomach
26	chr5:37817800-37819600	Enhancers	Colon Smooth Muscle	Colon
27	chr5:37817800-37824200	Strong transcription	Osteobl	bone
28	chr5:37818000-37818400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:37818000-37819400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:37818200-37821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:37818200-37834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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