Variant report

Variant	rs2910712
Chromosome Location	chr5:37809437-37809438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2910708	0.87[ASN][1000 genomes]
rs2910713	0.97[ASN][1000 genomes]
rs2910800	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2972934	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2973048	0.85[ASN][1000 genomes]
rs2973049	0.86[ASN][1000 genomes]
rs2973050	0.89[ASN][1000 genomes]
rs2973051	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37806800-37810200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:37807000-37810400	Weak transcription	HSMM	muscle
3	chr5:37807000-37811800	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:37808200-37812800	Weak transcription	HSMMtube	muscle
5	chr5:37808600-37810400	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:37808800-37810000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:37808800-37810200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:37808800-37810200	Enhancers	NHDF-Ad	bronchial
9	chr5:37808800-37810400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:37808800-37813000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:37809000-37810200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:37809200-37810200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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