Variant report

Variant	rs2910713
Chromosome Location	chr5:37806623-37806624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2910708	0.88[ASN][1000 genomes]
rs2910712	0.97[ASN][1000 genomes]
rs2973048	0.87[ASN][1000 genomes]
rs2973049	0.87[ASN][1000 genomes]
rs2973050	0.90[ASN][1000 genomes]
rs2973051	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2973060	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37804000-37808800	Weak transcription	NHDF-Ad	bronchial
2	chr5:37805800-37808200	Enhancers	HSMMtube	muscle
3	chr5:37805800-37808800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:37806000-37808600	Enhancers	Fetal Muscle Leg	muscle
5	chr5:37806200-37806800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:37806200-37807000	Enhancers	HSMM	muscle
7	chr5:37806400-37807000	Enhancers	Colon Smooth Muscle	Colon
8	chr5:37806600-37808200	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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