Variant report

Variant	rs2910798
Chromosome Location	chr5:37735849-37735850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10071815	1.00[EUR][1000 genomes]
rs10076102	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs13188890	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1549251	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1549252	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377651	1.00[EUR][1000 genomes]
rs28874633	1.00[EUR][1000 genomes]
rs2972941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2973085	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs41270339	0.86[EUR][1000 genomes]
rs55654436	0.86[EUR][1000 genomes]
rs56279820	0.86[EUR][1000 genomes]
rs59898254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451341	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs67885658	0.86[EUR][1000 genomes]
rs72743159	0.86[EUR][1000 genomes]
rs72743164	0.86[EUR][1000 genomes]
rs72743166	0.97[EUR][1000 genomes]
rs72743167	0.86[EUR][1000 genomes]
rs72743169	0.86[EUR][1000 genomes]
rs72743170	0.86[EUR][1000 genomes]
rs72743176	0.86[EUR][1000 genomes]
rs72743180	0.86[EUR][1000 genomes]
rs72743185	0.86[EUR][1000 genomes]
rs72743187	0.86[EUR][1000 genomes]
rs72743190	0.86[EUR][1000 genomes]
rs72743192	0.86[EUR][1000 genomes]
rs72743193	0.86[EUR][1000 genomes]
rs72743196	0.86[EUR][1000 genomes]
rs72743200	0.86[EUR][1000 genomes]
rs72743201	0.86[EUR][1000 genomes]
rs72743202	0.86[EUR][1000 genomes]
rs72745106	0.86[EUR][1000 genomes]
rs72745108	0.86[EUR][1000 genomes]
rs7448783	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7705963	1.00[EUR][1000 genomes]
rs7722257	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7737640	1.00[EUR][1000 genomes]
rs9283746	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37685200-37743200	Weak transcription	Gastric	stomach
2	chr5:37697000-37743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:37717600-37737600	Weak transcription	Small Intestine	intestine
4	chr5:37717800-37756200	Weak transcription	Right Ventricle	heart
5	chr5:37718400-37743200	Weak transcription	Aorta	Aorta
6	chr5:37718400-37745400	Weak transcription	Pancreas	Pancrea
7	chr5:37718400-37755800	Weak transcription	Spleen	Spleen
8	chr5:37719400-37743000	Weak transcription	Fetal Intestine Small	intestine
9	chr5:37721200-37737400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:37721400-37764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:37722400-37743200	Weak transcription	Esophagus	oesophagus
12	chr5:37723000-37737400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:37723200-37738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:37723400-37736000	Weak transcription	K562	blood
15	chr5:37723400-37738200	Weak transcription	A549	lung
16	chr5:37723600-37737400	Weak transcription	HUVEC	blood vessel
17	chr5:37724600-37738000	Weak transcription	NHEK	skin
18	chr5:37725000-37738400	Weak transcription	HMEC	breast
19	chr5:37725600-37737800	Weak transcription	NHLF	lung
20	chr5:37727600-37737400	Weak transcription	Hela-S3	cervix
21	chr5:37727600-37737600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:37727600-37738400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr5:37727600-37745400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:37728000-37736000	Weak transcription	NH-A	brain
25	chr5:37728000-37741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:37728000-37741800	Weak transcription	Ovary	ovary
27	chr5:37728000-37757200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:37728000-37758800	Weak transcription	Brain Germinal Matrix	brain
29	chr5:37728200-37741200	Weak transcription	Fetal Intestine Large	intestine
30	chr5:37728400-37737400	Weak transcription	Left Ventricle	heart
31	chr5:37728400-37737600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:37728400-37738600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:37728400-37743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:37728400-37745400	Weak transcription	Thymus	Thymus
35	chr5:37728800-37737400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:37728800-37738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:37728800-37738400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:37728800-37741600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr5:37728800-37754400	Weak transcription	Placenta	Placenta
40	chr5:37729000-37737400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:37729000-37738400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:37729000-37746000	Weak transcription	Fetal Thymus	thymus
43	chr5:37729400-37753200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr5:37729600-37740800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:37729600-37743000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr5:37729600-37743200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:37729600-37745000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:37729600-37755800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:37729800-37737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr5:37730000-37749800	Weak transcription	HepG2	liver

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