Variant report

Variant	rs9283746
Chromosome Location	chr5:37669999-37670000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37667989..37670619-chr5:37702239..37705026,2	MCF-7	breast:
2	chr5:37662824..37665076-chr5:37668148..37670201,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10071815	0.80[EUR][1000 genomes]
rs13188890	0.80[EUR][1000 genomes]
rs1549251	0.80[EUR][1000 genomes]
rs1549252	0.80[EUR][1000 genomes]
rs28377651	0.80[EUR][1000 genomes]
rs28874633	0.80[EUR][1000 genomes]
rs2910798	0.80[EUR][1000 genomes]
rs2972941	0.80[EUR][1000 genomes]
rs41270339	0.94[EUR][1000 genomes]
rs55633811	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55654436	0.94[EUR][1000 genomes]
rs56003317	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56279820	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59898254	0.80[EUR][1000 genomes]
rs6451341	0.80[EUR][1000 genomes]
rs67885658	0.94[EUR][1000 genomes]
rs72740947	0.81[AMR][1000 genomes]
rs72740968	0.85[EUR][1000 genomes]
rs72740970	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72740972	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740973	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740974	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72740975	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740978	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740981	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740983	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740989	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740990	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72740991	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72743159	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72743164	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72743166	0.83[EUR][1000 genomes]
rs72743167	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72743169	0.94[EUR][1000 genomes]
rs72743170	0.94[EUR][1000 genomes]
rs72743176	0.94[EUR][1000 genomes]
rs72743180	0.94[EUR][1000 genomes]
rs72743185	0.94[EUR][1000 genomes]
rs72743187	0.94[EUR][1000 genomes]
rs72743190	0.94[EUR][1000 genomes]
rs72743192	0.94[EUR][1000 genomes]
rs72743193	0.94[EUR][1000 genomes]
rs72743196	0.94[EUR][1000 genomes]
rs72743200	0.94[EUR][1000 genomes]
rs72743201	0.94[EUR][1000 genomes]
rs72743202	0.94[EUR][1000 genomes]
rs72745106	0.94[EUR][1000 genomes]
rs72745108	0.94[EUR][1000 genomes]
rs7448783	0.80[EUR][1000 genomes]
rs7705963	0.80[EUR][1000 genomes]
rs7709345	0.80[AFR][1000 genomes]
rs7709969	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7722257	0.80[EUR][1000 genomes]
rs7737640	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37654600-37671800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:37656600-37671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:37662800-37671800	Weak transcription	Small Intestine	intestine
4	chr5:37664000-37671800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:37665800-37671200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:37665800-37672400	Weak transcription	Primary B cells from cord blood	blood
7	chr5:37666200-37671800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:37666200-37672200	Weak transcription	Right Ventricle	heart
9	chr5:37666400-37672400	Weak transcription	Left Ventricle	heart
10	chr5:37666600-37671800	Weak transcription	Fetal Heart	heart
11	chr5:37666800-37671400	Weak transcription	Psoas Muscle	Psoas
12	chr5:37666800-37672400	Weak transcription	Adipose Nuclei	Adipose
13	chr5:37667000-37671000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:37667000-37672200	Weak transcription	Lung	lung
15	chr5:37667400-37671800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:37668200-37670000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:37668800-37671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:37669000-37671800	Weak transcription	Ovary	ovary
19	chr5:37669200-37671000	Weak transcription	A549	lung
20	chr5:37669200-37671800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:37669200-37671800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:37669200-37671800	Weak transcription	K562	blood
23	chr5:37669200-37672400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:37669200-37672800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:37669600-37670000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr5:37669600-37680000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:37669800-37670000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:37669800-37672000	Weak transcription	NH-A	brain
29	chr5:37669800-37672200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:37669800-37672200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:37669800-37672800	Weak transcription	NHDF-Ad	bronchial

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