Variant report

Variant	rs7709345
Chromosome Location	chr5:37694647-37694648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55789634	1.00[AMR][1000 genomes]
rs56347315	1.00[AMR][1000 genomes]
rs57825896	1.00[AMR][1000 genomes]
rs58870605	1.00[AMR][1000 genomes]
rs61742643	1.00[AMR][1000 genomes]
rs6866115	1.00[AMR][1000 genomes]
rs6876361	1.00[AMR][1000 genomes]
rs6880384	1.00[AMR][1000 genomes]
rs73749042	1.00[AMR][1000 genomes]
rs73749045	1.00[AMR][1000 genomes]
rs73749047	1.00[AMR][1000 genomes]
rs73749049	1.00[AMR][1000 genomes]
rs73749052	1.00[AMR][1000 genomes]
rs73749053	1.00[AMR][1000 genomes]
rs73749067	1.00[AMR][1000 genomes]
rs73749068	1.00[AMR][1000 genomes]
rs73749069	1.00[AMR][1000 genomes]
rs73749070	1.00[AMR][1000 genomes]
rs73749071	1.00[AMR][1000 genomes]
rs73749072	1.00[AMR][1000 genomes]
rs9283746	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37682200-37698000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:37682800-37696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:37683800-37696600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:37684400-37700000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:37684400-37705000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:37685000-37695800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:37685200-37696600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:37685200-37743200	Weak transcription	Gastric	stomach
9	chr5:37685400-37717600	Weak transcription	Pancreas	Pancrea
10	chr5:37685600-37711200	Weak transcription	Fetal Stomach	stomach
11	chr5:37685600-37727000	Weak transcription	Lung	lung
12	chr5:37687200-37720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:37687600-37695000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:37688400-37721400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:37688400-37721400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:37688400-37723600	Weak transcription	Placenta	Placenta
17	chr5:37689600-37696000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:37689600-37696600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:37689600-37726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr5:37692200-37721200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:37693800-37705200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:37694000-37695800	Strong transcription	Primary T cells from cord blood	blood
23	chr5:37694600-37698400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links